Function reference • rrvgo

All functions
`calculateSimMatrix()`	calculateSimMatrix Calculate the score similarity matrix between terms
`getGoSize()`	getGoSize Get GO term size (# of genes)
`getGoTerm()`	getGoTerm Get the description of a GO term
`getTermDisp()`	getTermDisp Calculate the term dispensability score, defined as the semantic similarity threshold a term was assigned to a cluster (namely, the similarity of a term to the cluster representative term).
`getTermUniq()`	getTermUniq Calculate the term uniqueness score, defined as 1 minus the average semantic similarity of a term to all other terms.
`gg_color_hue()`	gg_color_hue Emulate ggplot2 color palette.
`heatmapPlot()`	heatmapPlot Plot similarity matrix as a heatmap
`loadOrgdb()`	loadOrgdb Load an orgdb object
`reduceSimMatrix()`	reduceSimMatrix Reduce a set of GO terms based on their semantic similarity and scores.
`scatterPlot()`	scatterPlot Plot GO terms as scattered points.
`shiny_rrvgo()`	shiny_rrvgo Launch an interactive web interface.
`treemapPlot()`	treemapPlot Plot GO terms as a treemap.
`wordcloudPlot()`	wordlcoudPlot Plot GO reduced terms as a wordcloud.

Reference