treemapPlot Plot GO terms as a treemap. — treemapPlot • rrvgo

treemapPlot Plot GO terms as a treemap.

treemapPlot(reducedTerms, size = "score", title = "", ...)

Arguments

reducedTerms: a data.frame with the reduced terms from reduceSimMatrix()
size: what to use as point size. Can be either GO term's "size" or "score"
title: title of the plot. Defaults to nothing
...: other parameters sent to treemap::treemap()

Value

A list from the call to the `treemap()` function is silently returned

Examples

if (FALSE) { # \dontrun{
go_analysis <- read.delim(system.file("extdata/example.txt", package="rrvgo"))
simMatrix <- calculateSimMatrix(go_analysis$ID, orgdb="org.Hs.eg.db", ont="BP", method="Rel")
scores <- setNames(-log10(go_analysis$qvalue), go_analysis$ID)
reducedTerms <- reduceSimMatrix(simMatrix, scores, threshold=0.7, orgdb="org.Hs.eg.db")
treemapPlot(reducedTerms)
} # }