Identify genes plotted by duprateExpPlot

duprateExpIdentify Identify genes plotted by duprateExpPlot

duprateExpIdentify(DupMat, idCol = "ID")

Arguments

DupMat

The duplication matrix calculated by analyzeDuprates

idCol

The column from the duplication matrix containing the labels

Value

The identified points. x and y values match the ones from duprateExpPlot

Details

This function makes a barplot showing the cumulative read counts fraction from the duplication matrix calculated by analyzeDuprates.

Examples

# dm is a duplication matrix calculated by analyzeDuprates:
# R> dm <- analyzeDuprates(bamDuprm,gtf,stranded,paired,threads)
attach(dupRadar_examples)
#> The following objects are masked from dupRadar_examples (pos = 3):
#> 
#>     dm, dm.bad
#> The following objects are masked from dupRadar_examples (pos = 4):
#> 
#>     dm, dm.bad
#> The following objects are masked from dupRadar_examples (pos = 5):
#> 
#>     dm, dm.bad
#> The following objects are masked from dupRadar_examples (pos = 6):
#> 
#>     dm, dm.bad

# call the plot and identify genes
duprateExpPlot(DupMat=dm)
duprateExpIdentify(DupMat=dm)

#> integer(0)