Barplot of percentage of reads falling into expression bins
readcountExpBoxplot.RdreadcountExpBoxplot Barplot of percentage of reads falling into
expression bins
readcountExpBoxplot(DupMat, stepSize = 0.05, ...)Arguments
- DupMat
The duplication matrix calculated by
analyzeDuprates- stepSize
The number of bars to be shown
- ...
Other parameters sent to barplot()
Value
nothing Other parameters sent to barplot()
Details
This function makes a barplot of percentage of reads falling into expression bins
Examples
# dm is a duplication matrix calculated by analyzeDuprates:
# R> dm <- analyzeDuprates(bamDuprm,gtf,stranded,paired,threads)
attach(dupRadar_examples)
#> The following objects are masked from dupRadar_examples (pos = 3):
#>
#> dm, dm.bad
#> The following objects are masked from dupRadar_examples (pos = 4):
#>
#> dm, dm.bad
#> The following objects are masked from dupRadar_examples (pos = 5):
#>
#> dm, dm.bad
#> The following objects are masked from dupRadar_examples (pos = 6):
#>
#> dm, dm.bad
#> The following objects are masked from dupRadar_examples (pos = 7):
#>
#> dm, dm.bad
#> The following objects are masked from dupRadar_examples (pos = 8):
#>
#> dm, dm.bad
#> The following objects are masked from dupRadar_examples (pos = 9):
#>
#> dm, dm.bad
#> The following objects are masked from dupRadar_examples (pos = 10):
#>
#> dm, dm.bad
#> The following objects are masked from dupRadar_examples (pos = 11):
#>
#> dm, dm.bad
# barplot of percentage of reads falling into expression bins
readcountExpBoxplot(DupMat=dm)
