Draw histogram with the expression values

expressionHist Draw histogram with the expression values

expressionHist(DupMat, value = "RPK", ...)

Arguments

DupMat

The duplication matrix calculated by analyzeDuprates

value

The column from the duplication matrix containing the expression values

...

Other parameters sent to hist()

Value

nothing

Details

This function draws a histogram of the expression values from the duplication matrix calculated by analyzeDuprates.

Examples

# dm is a duplication matrix calculated by analyzeDuprates:
# R> dm <- analyzeDuprates(bamDuprm,gtf,stranded,paired,threads)
attach(dupRadar_examples)
#> The following objects are masked from dupRadar_examples (pos = 3):
#> 
#>     dm, dm.bad
#> The following objects are masked from dupRadar_examples (pos = 4):
#> 
#>     dm, dm.bad
#> The following objects are masked from dupRadar_examples (pos = 5):
#> 
#>     dm, dm.bad
#> The following objects are masked from dupRadar_examples (pos = 6):
#> 
#>     dm, dm.bad
#> The following objects are masked from dupRadar_examples (pos = 7):
#> 
#>     dm, dm.bad
#> The following objects are masked from dupRadar_examples (pos = 8):
#> 
#>     dm, dm.bad

# histogram of expression values for annotation
expressionHist(DupMat=dm)