Duplication rate ~ total reads per kilobase (RPK) boxplot

duprateExpBoxplot Duplication rate ~ total reads per kilobase (RPK) boxplot

duprateExpBoxplot(DupMat, stepSize = 0.05, ...)

Arguments

DupMat

The duplication matrix calculated by analyzeDuprates

stepSize

Expression bin seze for the boxplot

...

Other params sent to boxplot

Value

nothing

Details

This function makes a boxplot showing the distribution of per gene duplication rate versus the reads per kilobase (RPK) inside gene expression bins.

Examples

# dm is a duplication matrix calculated by analyzeDuprates:
# R> dm <- analyzeDuprates(bamDuprm,gtf,stranded,paired,threads)
attach(dupRadar_examples)
#> The following objects are masked from dupRadar_examples (pos = 3):
#> 
#>     dm, dm.bad

# duprate boxplot
duprateExpBoxplot(DupMat=dm)