Barplot showing the cumulative read counts fraction
cumulativeDuprateBarplot.RdcumulativeDuprateBarplot Barplot showing the cumulative read counts
fraction
cumulativeDuprateBarplot(DupMat, stepSize = 0.05, ...)Arguments
- DupMat
The duplication matrix calculated by
analyzeDuprates- stepSize
The size of the windows used for plotting
- ...
Other params sent to barplot
Value
nothing
Details
This function makes a barplot showing the cumulative read counts fraction
from the duplication matrix calculated by analyzeDuprates.
Examples
# dm is a duplication matrix calculated by analyzeDuprates:
# R> dm <- analyzeDuprates(bamDuprm,gtf,stranded,paired,threads)
attach(dupRadar_examples)
# call the plot
cumulativeDuprateBarplot(DupMat=dm)
